Research Paper Volume 8, Issue 9 pp 1896—1922
Analysis of the machinery and intermediates of the 5hmC-mediated DNA demethylation pathway in aging on samples from the MARK-AGE Study
- 1 Department of Cellular Biotechnologies and Hematology, Faculty of Pharmacy and Medicine, Sapienza University of Rome, Rome 00161, Italy
- 2 Pasteur Institute-Fondazione Cenci Bolognetti, Rome 00161, Italy
- 3 National Institute of Health and Science on Aging (INRCA), Nutrition and Ageing Centre, Scientific and Technological Research Area, 60100 Ancona, Italy
- 4 Department of Experimental, Diagnostic and Specialty Medicine, Alma Mater Studiorum-University of Bologna, Bologna 40126, Italy
- 5 CIG-Interdepartmental Center “L. Galvani”, Alma Mater Studiorum, University of Bologna, 40126 Bologna, Italy
- 6 The School of Medicine, The University of Tampere, 33014 Tampere, Finland
- 7 Department for Internal Medicine, University Teaching Hospital Hall in Tirol, Tirol, Austria
- 8 BioTeSys GmbH, 73728 Esslingen, Germany
- 9 Department of Molecular Epidemiology, Leiden University Medical Centre, Leiden, The Netherlands
- 10 University of Namur, Research Unit on Cellular Biology, Namur B-5000, Belgium
- 11 Laboratory of the Molecular Bases of Ageing, Nencki Institute of Experimental Biology, Polish Academy of Sciences, 02-093 Warsaw, Poland
- 12 National Hellenic Research Foundation, Institute of Biology, Medicinal Chemistry and Biotechnology, Athens, Greece
- 13 Institute of Nutritional Medicine (180c), University of Hohenheim, 70599 Stuttgart, Gemany
- 14 German Institute of Human Nutrition Potsdam-Rehbruecke (DIfE), 14558 Nuthetal, Germany
- 15 Centre for Health Protection, National Institute for Public Health and the Environment, 3720 BA Bilthoven, The Netherlands
- 16 Molecular Toxicology Group, Department of Biology, University of Konstanz, 78457 Konstanz, Germany
- 17 Department of Biology, University of Rome "Tor Vergata", 00133 Rome, Italy
- 18 Shared senior authorship
Received: June 17, 2016 Accepted: August 15, 2016 Published: August 29, 2016
https://doi.org/10.18632/aging.101022How to Cite
Abstract
Gradual changes in the DNA methylation landscape occur throughout aging virtually in all human tissues. A widespread reduction of 5-methylcytosine (5mC), associated with highly reproducible site-specific hypermethylation, characterizes the genome in aging. Therefore, an equilibrium seems to exist between general and directional deregulating events concerning DNA methylation controllers, which may underpin the age-related epigenetic changes. In this context, 5mC-hydroxylases (TET enzymes) are new potential players. In fact, TETs catalyze the stepwise oxidation of 5mC to 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC) and 5-carboxylcytosine (5caC), driving the DNA demethylation process based on thymine DNA glycosylase (TDG)-mediated DNA repair pathway. The present paper reports the expression of DNA hydroxymethylation components, the levels of 5hmC and of its derivatives in peripheral blood mononuclear cells of age-stratified donors recruited in several European countries in the context of the EU Project ‘MARK-AGE’. The results provide evidence for an age-related decline of TET1, TET3 and TDG gene expression along with a decrease of 5hmC and an accumulation of 5caC. These associations were independent of confounding variables, including recruitment center, gender and leukocyte composition. The observed impairment of 5hmC-mediated DNA demethylation pathway in blood cells may lead to aberrant transcriptional programs in the elderly.