Research Paper Volume 3, Issue 6 pp 576—583
New comparative genomics approach reveals a conserved health span signature across species
- 1 Department of Molecular Biology, Cell Biology and Biochemistry, Division of Biology and Medicine, Brown University, Providence, RI 02912, USA
- 2 Department of Physics, Brown University, Providence, RI 02912, USA
- 3 Institute for Brain and Neural Systems, Brown University, Providence, RI 02912, USA
Received: June 15, 2011 Accepted: June 25, 2011 Published: June 29, 2011
https://doi.org/10.18632/aging.100342How to Cite
Abstract
Environmental and genetic interventions extend health span in a range of organisms by triggering changes in different specific but complementary pathways. We investigated the gene expression changes that occur across species when health span is extended via different interventions. To perform this comparison using heterogeneous datasets from different measurement platforms and organisms, we developed a novel non-parametric methodology that can detect statistical significance of overlaps in ranked lists of genes, and estimate the number of genes with a common expression profile. By comparing genetic and environmental interventions that consistently lead to increased health span in invertebrates and vertebrates we built a conserved health span signature and described how such a signature depends on tissue type. Furthermore, we examined the relationship between calorie restriction and resveratrol administration and for the first time, identified common gene and pathway changes in calorie restriction and resveratrol in both invertebrates and mammals. Our approach can thus be used to explore and better define the relationships between highly complex biological phenomena, in this case those that affect the health and longevity.